Advancing Cryo-EM with Mass Photometry: Accurate Mass Measurements for Macromolecular Structures

September 16, 2024 3 min read

Advancing Cryo-EM with Mass Photometry: Accurate Mass Measurements for Macromolecular Structures

Cryo-Electron Microscopy (Cryo-EM) has been a transformative force in structural biology. It has allowed researchers to visualize biomolecules in their near-native states, providing detailed snapshots of the molecular machinery at work inside our cells. From understanding protein complexes to unravelling the architecture of viruses, Cryo-EM has given us a window into the microscopic world. However, while Cryo-EM excels at delivering stunning structural images, one aspect has remained tricky:accurate mass measurements.

That’s where  mass photometry steps in.

 

The Challenge of Mass Accuracy in Cryo-EM

Cryo-EM’s strength lies in its ability to image macromolecular structures at high resolution. But structural images alone can sometimes be misleading or incomplete. For instance, even though Cryo-EM reveals a protein complex’s shape and arrangement, there might be questions about its composition or if certain subunits are missing. This is where mass measurements become vital. Knowing the mass of a macromolecule adds another layer of validation—one that’s essential for accurate interpretation.

Historically, researchers have had to rely on other techniques, like mass spectrometry or dynamic light scattering, to estimate the mass of macromolecules. But these methods can be indirect or limited when applied to large, complex structures. What if there was a way to verify mass directly and non-invasively, while keeping the sample in a nearly native state?

 

Here Comes Mass Photometry

Mass photometry is a revolutionary technology that has recently gained traction, especially in combination with structural biology techniques like Cryo-EM. Unlike other methods, mass photometry allows researchers to measure the mass of individual molecules in solution with remarkable precision. This technology works by detecting the light scattering of molecules when they land on a surface, allowing scientists to directly observe and measure them in real time.

This breakthrough has exciting implications for Cryo-EM studies.

 

A Perfect Pair: Mass Photometry and Cryo-EM

When combined, mass photometry and Cryo-EM offer a powerful one-two punch. Cryo-EM provides a detailed image of the macromolecule, while mass photometry supplies accurate mass data. Here’s why this matters:

Validation of Structural Integrity: When researchers obtain Cryo-EM images, they may wonder if the structure they’re seeing represents the entire complex or if certain subunits are missing. With mass photometry, they can instantly verify whether the mass of the observed complex matches what’s expected. If there’s a discrepancy, it can indicate that parts of the molecule are missing or degraded.


Improved Data Interpretation: Cryo-EM images are often averaged from multiple particles to increase resolution. However, heterogeneity in these particles (e.g., different conformations or binding states) can lead to blurred or ambiguous data. By using mass photometry to measure each particle’s mass, researchers can sort their Cryo-EM data into more homogeneous subsets, resulting in clearer and more interpretable images.


Real-Time Analysis: One of the most appealing aspects of mass photometry is its ability to offer real-time mass measurements. This means that researchers can quickly confirm the success of their Cryo-EM sample preparations, eliminating the need for time-consuming reanalysis and giving them greater confidence in their results.

     

    Transforming Macromolecular Research

    The pairing of mass photometry with Cryo-EM is already being applied to a wide range of biological questions. For example, researchers are using it to study large protein assemblies involved in cell signaling or to investigate viral capsid structures—both of which are too complex for traditional mass measurement techniques.

    By verifying mass alongside structural data, scientists can make more informed interpretations of their findings. This is particularly crucial in the development of pharmaceuticals, where a thorough understanding of protein targets and molecular complexes can lead to more effective drug design.

     

    A Future of Precision

    The future of structural biology looks promising with the integration of mass photometry and Cryo-EM. As this technology continues to evolve, we can expect even greater accuracy in macromolecular characterization, leading to breakthroughs in fields ranging from biotechnology to medicine.

    For researchers tackling the complexities of molecular biology, combining these two methods is like having both a map and a compass: Cryo-EM provides the detailed landscape, and mass photometry ensures you know exactly where you stand.

    Throughout Canada, Systems for Research (SFR) is working actively to provide the latest equipment to researchers for harnessing the combined power of these technologies and opening doors to new possibilities into the world of nanotechnology.